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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs10461617 1 rs1423621 chr5:56101035 C5orf35 chr5:56205103-56213010:+ 0.95 6.34 4.59E-8 Type 2 diabetes
UVM cis rs2071518 1 rs1461691 chr8:120440816 NOV chr8:120428552-120436678:+ 0.6 4.95 7.51E-6 Blood pressure
UVM cis rs2071518 1 rs1461695 chr8:120444301 NOV chr8:120428552-120436678:+ 0.63 5.13 3.9E-6 Blood pressure
UVM cis rs10935120 1 rs1498718 chr3:134205920 ANAPC13 chr3:134196547-134204865:- 0.46 7.11 2.47E-9 Height
UVM cis rs979233 1 rs1509460 chr5:42433819 C5orf51 chr5:41904470-41921737:+ -0.46 -5.35 1.75E-6 Systemic lupus erythematosus
UVM cis rs979233 1 rs1509461 chr5:42407860 C5orf51 chr5:41904470-41921737:+ 0.45 5.41 1.41E-6 Systemic lupus erythematosus
UVM cis rs10935120 1 rs1534025 chr3:134313304 ANAPC13 chr3:134196547-134204865:- -0.45 -6.73 1.03E-8 Height
UVM cis rs10935120 1 rs1534026 chr3:134284767 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs10461617 1 rs1559282 chr5:56099375 C5orf35 chr5:56205103-56213010:+ 0.95 6.34 4.59E-8 Type 2 diabetes
UVM cis rs9876781 1 rs1563736 chr3:48436794 TREX1 chr3:48501186-48509043:+ -0.38 -4.81 1.22E-5 Longevity
UVM cis rs703842 1 rs1599932 chr12:58177943 TSFM chr12:58176536-58191367:+ -0.57 -5.04 5.32E-6 Multiple sclerosis
UVM cis rs2071518 1 rs16892582 chr8:120445542 NOV chr8:120428552-120436678:+ 0.63 5.13 3.9E-6 Blood pressure
UVM cis rs8135828 1 rs16987832 chr22:29978749 CABP7 chr22:30116344-30127818:+ 1.01 6.59 1.74E-8 Lipid traits
UVM cis rs2239557 1 rs17096228 chr14:74558669 LIN52 chr14:74551656-74667117:+ 0.44 5.65 5.92E-7 Common traits (Other)
UVM cis rs11190604 1 rs17113137 chr10:102241998 SEC31B chr10:102246403-102289636:- -0.39 -5.04 5.29E-6 Palmitoleic acid (16:1n-7) plasma levels